# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067841.1 - 374 CntA - 371 7.1e-245 809.1 0.4 1 1 2.3e-248 8e-245 808.9 0.4 1 371 1 373 1 373 0.99 carnitine monooxygenase subunit YeaW [Shigella dysenteriae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000164925.1_ASM16492v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000164925.1_ASM16492v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000164925.1_ASM16492v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:49 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287011.1 - 321 CntB - 317 1.1e-185 613.7 0.2 1 1 1.5e-188 1.3e-185 613.5 0.2 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Shigella dysenteriae] WP_000178644.1 - 322 CntB - 317 1.3e-25 87.8 0.0 1 1 1.9e-28 1.6e-25 87.5 0.0 9 304 12 311 6 321 0.78 MULTISPECIES: NADH oxidoreductase [Enterobacteriaceae] WP_000883119.1 - 396 CntB - 317 2.5e-13 47.5 0.0 1 1 2e-15 1.7e-12 44.7 0.0 18 222 164 391 155 394 0.76 NO-inducible flavohemoprotein [Shigella dysenteriae] WP_000124825.1 - 84 CntB - 317 7.6e-09 32.7 0.2 1 1 1e-11 9e-09 32.5 0.2 238 311 8 79 2 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000164925.1_ASM16492v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000164925.1_ASM16492v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000164925.1_ASM16492v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:49 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067832.1 - 374 CntA - 371 1.4e-245 812.1 0.3 1 1 5.8e-249 1.5e-245 811.9 0.3 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 7.1e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000166555.1_ASM16655v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166555.1_ASM16655v2_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000166555.1_ASM16655v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287035.1 - 321 CntB - 317 5.3e-186 615.4 0.2 1 1 5.7e-189 6e-186 615.2 0.2 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178673.1 - 322 CntB - 317 5.8e-25 86.3 0.0 1 1 7e-28 7.3e-25 85.9 0.0 9 304 12 311 6 321 0.77 MULTISPECIES: NADH oxidoreductase [Enterobacteriaceae] WP_000206364.1 - 356 CntB - 317 2.4e-19 67.8 0.0 1 1 1.5e-21 1.5e-18 65.2 0.0 8 289 6 322 2 349 0.74 MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Enterobacteriaceae] WP_000883122.1 - 396 CntB - 317 1.3e-13 49.0 0.0 1 1 8.6e-16 9e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135040.1 - 84 CntB - 317 1.8e-08 32.1 0.2 1 1 2e-11 2.1e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Proteobacteria] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000166555.1_ASM16655v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166555.1_ASM16655v2_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000166555.1_ASM16655v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.6e-246 813.8 0.4 1 1 1.7e-249 4e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211175.1 - 453 CntA - 371 6.5e-20 69.3 0.0 1 1 4.4e-23 1e-19 68.6 0.0 23 169 22 171 13 183 0.87 aromatic ring-hydroxylating dioxygenase subunit alpha [Escherichia coli] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000166575.1_ASM16657v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166575.1_ASM16657v2_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000166575.1_ASM16657v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287035.1 - 321 CntB - 317 4.9e-186 615.4 0.2 1 1 5.7e-189 5.5e-186 615.2 0.2 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178677.1 - 322 CntB - 317 9.8e-25 85.4 0.0 1 1 1.3e-27 1.2e-24 85.1 0.0 9 304 12 311 6 321 0.78 MULTISPECIES: NADH oxidoreductase [Enterobacteriaceae] WP_000206364.1 - 356 CntB - 317 2.2e-19 67.8 0.0 1 1 1.5e-21 1.4e-18 65.2 0.0 8 289 6 322 2 349 0.74 MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Enterobacteriaceae] WP_000883124.1 - 396 CntB - 317 3e-13 47.7 0.0 1 1 1.8e-15 1.7e-12 45.2 0.0 18 222 164 391 155 394 0.74 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135040.1 - 84 CntB - 317 1.6e-08 32.1 0.2 1 1 2e-11 1.9e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Proteobacteria] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000166575.1_ASM16657v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166575.1_ASM16657v2_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000166575.1_ASM16657v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067824.1 - 374 CntA - 371 1.6e-245 811.7 0.4 1 1 7.3e-249 1.7e-245 811.6 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211157.1 - 453 CntA - 371 4.6e-20 69.8 0.0 1 1 3.1e-23 7.4e-20 69.1 0.0 23 169 22 171 13 183 0.87 aromatic ring-hydroxylating dioxygenase subunit alpha [Escherichia coli] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000166595.1_ASM16659v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166595.1_ASM16659v2_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000166595.1_ASM16659v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287009.1 - 321 CntB - 317 7.2e-188 621.4 0.2 1 1 8.5e-191 8.1e-188 621.2 0.2 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178651.1 - 322 CntB - 317 5.5e-25 86.2 0.0 1 1 7.3e-28 7e-25 85.9 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000206361.1 - 356 CntB - 317 1.2e-18 65.4 0.0 1 1 8.1e-21 7.7e-18 62.7 0.0 8 289 6 322 2 349 0.74 phenylacetate-CoA oxygenase/reductase subunit PaaK [Escherichia coli] WP_000883122.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 8.6e-16 8.2e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.6e-08 32.2 0.2 1 1 2e-11 1.9e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000166595.1_ASM16659v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166595.1_ASM16659v2_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000166595.1_ASM16659v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067828.1 - 374 CntA - 371 7e-246 812.9 0.3 1 1 3.3e-249 7.8e-246 812.7 0.3 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.5e-20 69.3 0.0 1 1 4.4e-23 1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000166615.1_ASM16661v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166615.1_ASM16661v2_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000166615.1_ASM16661v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:50 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001286998.1 - 321 CntB - 317 1.4e-185 613.9 0.2 1 1 1.6e-188 1.5e-185 613.7 0.2 1 317 1 321 1 321 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaX [Enterobacteriaceae] WP_000178677.1 - 322 CntB - 317 9.7e-25 85.4 0.0 1 1 1.3e-27 1.2e-24 85.1 0.0 9 304 12 311 6 321 0.78 MULTISPECIES: NADH oxidoreductase [Enterobacteriaceae] WP_000206368.1 - 356 CntB - 317 9e-20 69.1 0.0 1 1 5.9e-22 5.6e-19 66.5 0.0 8 289 6 322 2 349 0.74 MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Enterobacteriaceae] WP_000883122.1 - 396 CntB - 317 1.1e-13 49.0 0.0 1 1 8.6e-16 8.1e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135040.1 - 84 CntB - 317 1.6e-08 32.1 0.2 1 1 2e-11 1.9e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Proteobacteria] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000166615.1_ASM16661v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000166615.1_ASM16661v2_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000166615.1_ASM16661v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:51 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.5e-246 813.8 0.4 1 1 1.7e-249 3.9e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211179.1 - 453 CntA - 371 6.4e-20 69.3 0.0 1 1 4.4e-23 1e-19 68.6 0.0 23 169 22 171 13 183 0.87 aromatic ring-hydroxylating dioxygenase subunit alpha [Escherichia coli] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000167915.2_ASM16791v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000167915.2_ASM16791v2_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000167915.2_ASM16791v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:51 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287031.1 - 321 CntB - 317 1.7e-186 616.8 0.2 1 1 2.1e-189 1.9e-186 616.7 0.2 1 317 1 321 1 321 1.00 MULTISPECIES: carnitine monooxygenase subunit YeaX [Enterobacteriaceae] WP_000178677.1 - 322 CntB - 317 9.6e-25 85.4 0.0 1 1 1.3e-27 1.2e-24 85.1 0.0 9 304 12 311 6 321 0.78 MULTISPECIES: NADH oxidoreductase [Enterobacteriaceae] WP_000206389.1 - 356 CntB - 317 2.1e-18 64.6 0.0 1 1 1.4e-20 1.3e-17 62.0 0.0 9 289 7 322 2 349 0.74 phenylacetate-CoA oxygenase/reductase subunit PaaK [Escherichia coli] WP_000883122.1 - 396 CntB - 317 1.1e-13 49.0 0.0 1 1 8.6e-16 8.1e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135040.1 - 84 CntB - 317 1.6e-08 32.1 0.2 1 1 2e-11 1.9e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Proteobacteria] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000167915.2_ASM16791v2_protein.faa # Option settings: hmmsearch --domtblout GCF_000167915.2_ASM16791v2_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000167915.2_ASM16791v2_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:51 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.8e-246 813.8 0.4 1 1 1.7e-249 4.3e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.9e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000171955.1_ASM17195v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000171955.1_ASM17195v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000171955.1_ASM17195v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:54 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.6e-185 613.8 0.1 1 1 1.4e-188 1.7e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 5e-25 86.4 0.0 1 1 5e-28 6.3e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.6e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.7e-08 32.2 0.2 1 1 1.6e-11 2.1e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000171955.1_ASM17195v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000171955.1_ASM17195v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000171955.1_ASM17195v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:54 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.9e-246 813.8 0.4 1 1 1.7e-249 4.3e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 7e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000171975.1_ASM17197v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000171975.1_ASM17197v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000171975.1_ASM17197v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:54 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.6e-185 613.8 0.1 1 1 1.4e-188 1.8e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 5e-25 86.4 0.0 1 1 5e-28 6.4e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.7e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.7e-08 32.2 0.2 1 1 1.6e-11 2.1e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000171975.1_ASM17197v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000171975.1_ASM17197v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000171975.1_ASM17197v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:54 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 4e-246 813.8 0.4 1 1 1.7e-249 4.4e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 7.2e-20 69.3 0.0 1 1 4.4e-23 1.2e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000171995.1_ASM17199v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000171995.1_ASM17199v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000171995.1_ASM17199v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:55 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.6e-185 613.8 0.1 1 1 1.4e-188 1.8e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 5.2e-25 86.4 0.0 1 1 5e-28 6.6e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.3e-13 49.0 0.0 1 1 6.8e-16 9e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.7e-08 32.2 0.2 1 1 1.6e-11 2.1e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000171995.1_ASM17199v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000171995.1_ASM17199v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000171995.1_ASM17199v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:55 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.8e-246 813.8 0.4 1 1 1.7e-249 4.3e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 7e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000172035.1_ASM17203v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000172035.1_ASM17203v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000172035.1_ASM17203v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:55 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.6e-185 613.8 0.1 1 1 1.4e-188 1.8e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 5e-25 86.4 0.0 1 1 5e-28 6.4e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.7e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.7e-08 32.2 0.2 1 1 1.6e-11 2.1e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000172035.1_ASM17203v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000172035.1_ASM17203v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000172035.1_ASM17203v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:55 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001277084.1 - 371 CntA - 371 8.9e-262 864.8 1.7 1 1 1.6e-264 9.9e-262 864.6 1.7 1 371 1 371 1 371 1.00 MULTISPECIES: Rieske 2Fe-2S domain-containing protein [Acinetobacter] WP_000204410.1 - 471 CntA - 371 4.9e-31 105.5 0.0 1 1 1.2e-33 7.3e-31 105.0 0.0 16 226 23 238 13 264 0.84 MULTISPECIES: anthranilate 1,2-dioxygenase large subunit [Acinetobacter] WP_001084464.1 - 425 CntA - 371 1.4e-29 100.7 0.0 1 1 3.4e-32 2e-29 100.2 0.0 24 221 26 226 15 243 0.89 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] WP_001137401.1 - 460 CntA - 371 2e-27 93.6 0.0 1 1 4.4e-30 2.7e-27 93.2 0.0 5 228 13 244 9 281 0.82 MULTISPECIES: benzoate 1,2-dioxygenase large subunit [Acinetobacter] WP_000470080.1 - 358 CntA - 371 7.2e-09 32.6 0.0 1 1 2.2e-11 1.3e-08 31.7 0.0 58 168 19 123 1 128 0.84 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000991783.1 - 355 CntA - 371 3.9e-07 26.9 0.1 1 1 1.4e-09 8.2e-07 25.8 0.1 37 159 16 135 2 264 0.79 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000173395.1_ASM17339v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000173395.1_ASM17339v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000173395.1_ASM17339v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:58 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000146423.1 - 318 CntB - 317 3e-208 687.9 1.0 1 1 6.7e-211 3.5e-208 687.7 1.0 1 317 2 318 2 318 1.00 MULTISPECIES: PDR/VanB family oxidoreductase [Acinetobacter calcoaceticus/baumannii complex] WP_000210292.1 - 317 CntB - 317 2.9e-80 267.4 0.2 1 1 6.4e-83 3.3e-80 267.3 0.2 20 317 18 317 2 317 0.94 PDR/VanB family oxidoreductase [Acinetobacter baumannii] WP_000382535.1 - 314 CntB - 317 1.8e-73 245.1 0.8 1 1 3.9e-76 2e-73 245.0 0.8 8 317 2 314 1 314 0.96 PDR/VanB family oxidoreductase [Acinetobacter baumannii] WP_000064934.1 - 338 CntB - 317 7.5e-22 75.5 0.0 1 2 5.3e-06 0.0027 14.5 0.2 243 307 18 86 13 92 0.84 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_000064934.1 - 338 CntB - 317 7.5e-22 75.5 0.0 2 2 4e-19 2.1e-16 57.6 0.0 5 222 107 336 103 338 0.76 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_086223131.1 - 344 CntB - 317 5.9e-20 69.3 0.1 1 2 8.8e-09 4.5e-06 23.7 0.2 243 310 19 88 2 93 0.75 anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter baumannii] WP_086223131.1 - 344 CntB - 317 5.9e-20 69.3 0.1 2 2 1.3e-14 6.7e-12 42.8 0.0 8 222 110 338 103 343 0.74 anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter baumannii] WP_001147896.1 - 356 CntB - 317 4e-16 56.7 0.3 1 1 9.3e-19 4.8e-16 56.4 0.3 40 317 71 356 39 356 0.74 ferredoxin reductase [Acinetobacter baumannii] WP_000994560.1 - 341 CntB - 317 1.9e-13 47.9 1.4 1 1 4.4e-16 2.3e-13 47.6 1.4 84 306 108 331 31 336 0.72 ferredoxin reductase [Acinetobacter baumannii] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000173395.1_ASM17339v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000173395.1_ASM17339v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000173395.1_ASM17339v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:48:58 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.8e-246 813.8 0.4 1 1 1.7e-249 4.2e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.9e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000175735.1_ASM17573v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000175735.1_ASM17573v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000175735.1_ASM17573v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:03 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.5e-185 613.8 0.1 1 1 1.4e-188 1.7e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 4.9e-25 86.4 0.0 1 1 5e-28 6.3e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.6e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.7e-08 32.2 0.2 1 1 1.6e-11 2e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000175735.1_ASM17573v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000175735.1_ASM17573v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000175735.1_ASM17573v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:03 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.8e-246 813.8 0.4 1 1 1.7e-249 4.3e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.9e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000175755.1_ASM17575v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000175755.1_ASM17575v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000175755.1_ASM17575v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:04 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.6e-185 613.8 0.1 1 1 1.4e-188 1.7e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 5e-25 86.4 0.0 1 1 5e-28 6.3e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.7e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.7e-08 32.2 0.2 1 1 1.6e-11 2.1e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000175755.1_ASM17575v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000175755.1_ASM17575v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000175755.1_ASM17575v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:04 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001277084.1 - 371 CntA - 371 9e-262 864.8 1.7 1 1 1.9e-264 1e-261 864.6 1.7 1 371 1 371 1 371 1.00 MULTISPECIES: Rieske 2Fe-2S domain-containing protein [Acinetobacter] WP_001088745.1 - 396 CntA - 371 1.2e-37 127.3 0.0 1 1 3.2e-40 1.7e-37 126.8 0.0 17 341 24 368 11 372 0.81 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000204398.1 - 471 CntA - 371 4.2e-31 105.8 0.0 1 1 1.2e-33 6.3e-31 105.2 0.0 17 226 24 238 13 263 0.84 MULTISPECIES: anthranilate 1,2-dioxygenase large subunit [Acinetobacter] WP_001084464.1 - 425 CntA - 371 1.4e-29 100.7 0.0 1 1 3.9e-32 2e-29 100.2 0.0 24 221 26 226 15 243 0.89 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] WP_001137401.1 - 460 CntA - 371 2.1e-27 93.6 0.0 1 1 5.2e-30 2.7e-27 93.2 0.0 5 228 13 244 9 281 0.82 MULTISPECIES: benzoate 1,2-dioxygenase large subunit [Acinetobacter] WP_000470073.1 - 358 CntA - 371 5.4e-09 33.0 0.0 1 1 2.1e-11 1.1e-08 32.0 0.0 58 168 19 123 1 128 0.84 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000991783.1 - 355 CntA - 371 3.9e-07 26.9 0.1 1 1 1.6e-09 8.3e-07 25.8 0.1 37 159 16 135 2 264 0.79 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000177695.1_ASM17769v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000177695.1_ASM17769v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000177695.1_ASM17769v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:05 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000146428.1 - 318 CntB - 317 6.1e-208 686.9 0.8 1 1 1.5e-210 7e-208 686.7 0.8 1 317 2 318 2 318 1.00 MULTISPECIES: PDR/VanB family oxidoreductase [Acinetobacter] WP_000210290.1 - 317 CntB - 317 2.7e-80 267.5 0.2 1 1 6.8e-83 3.1e-80 267.4 0.2 20 317 18 317 2 317 0.94 MULTISPECIES: PDR/VanB family oxidoreductase [Acinetobacter] WP_000382530.1 - 314 CntB - 317 2.8e-75 251.1 0.6 1 1 6.9e-78 3.2e-75 250.9 0.6 8 317 2 314 1 314 0.96 PDR/VanB family oxidoreductase [Acinetobacter baumannii] WP_000077461.1 - 353 CntB - 317 2.4e-22 77.2 0.3 1 1 1e-24 4.6e-22 76.2 0.3 9 313 7 347 1 351 0.71 MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Acinetobacter calcoaceticus/baumannii complex] WP_000064953.1 - 338 CntB - 317 2.3e-21 73.9 0.0 1 2 9.1e-06 0.0041 14.0 0.3 243 307 18 86 13 92 0.84 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_000064953.1 - 338 CntB - 317 2.3e-21 73.9 0.0 2 2 6.6e-19 3e-16 57.1 0.0 5 222 107 336 103 338 0.78 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_001985613.1 - 344 CntB - 317 8.4e-20 68.8 0.1 1 2 1.1e-08 5.1e-06 23.5 0.2 243 310 19 88 2 93 0.75 MULTISPECIES: anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter] WP_001985613.1 - 344 CntB - 317 8.4e-20 68.8 0.1 2 2 1.6e-14 7.5e-12 42.7 0.0 8 222 110 338 103 343 0.74 MULTISPECIES: anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter] WP_001147890.1 - 356 CntB - 317 4.3e-16 56.6 0.3 1 1 1.1e-18 5.2e-16 56.3 0.3 40 317 71 356 39 356 0.74 MULTISPECIES: ferredoxin reductase [Acinetobacter] WP_000994535.1 - 341 CntB - 317 2.6e-13 47.5 0.8 1 1 7.1e-16 3.2e-13 47.2 0.8 82 306 106 331 30 336 0.68 ferredoxin reductase [Acinetobacter baumannii] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000177695.1_ASM17769v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000177695.1_ASM17769v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000177695.1_ASM17769v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:05 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001277084.1 - 371 CntA - 371 8.9e-262 864.8 1.7 1 1 1.9e-264 1e-261 864.6 1.7 1 371 1 371 1 371 1.00 MULTISPECIES: Rieske 2Fe-2S domain-containing protein [Acinetobacter] WP_001088745.1 - 396 CntA - 371 1.2e-37 127.3 0.0 1 1 3.2e-40 1.7e-37 126.8 0.0 17 341 24 368 11 372 0.81 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000204398.1 - 471 CntA - 371 4.2e-31 105.8 0.0 1 1 1.2e-33 6.2e-31 105.2 0.0 17 226 24 238 13 263 0.84 MULTISPECIES: anthranilate 1,2-dioxygenase large subunit [Acinetobacter] WP_001084464.1 - 425 CntA - 371 1.4e-29 100.7 0.0 1 1 3.9e-32 2e-29 100.2 0.0 24 221 26 226 15 243 0.89 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] WP_001137401.1 - 460 CntA - 371 2e-27 93.6 0.0 1 1 5.2e-30 2.7e-27 93.2 0.0 5 228 13 244 9 281 0.82 MULTISPECIES: benzoate 1,2-dioxygenase large subunit [Acinetobacter] WP_000470073.1 - 358 CntA - 371 5.3e-09 33.0 0.0 1 1 2.1e-11 1.1e-08 32.0 0.0 58 168 19 123 1 128 0.84 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000991783.1 - 355 CntA - 371 3.9e-07 26.9 0.1 1 1 1.6e-09 8.2e-07 25.8 0.1 37 159 16 135 2 264 0.79 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000177715.1_ASM17771v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000177715.1_ASM17771v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000177715.1_ASM17771v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:06 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000146431.1 - 318 CntB - 317 9.5e-207 683.0 0.6 1 1 2.4e-209 1.1e-206 682.8 0.6 1 317 2 318 2 318 1.00 PDR/VanB family oxidoreductase [Acinetobacter baumannii] WP_000210290.1 - 317 CntB - 317 2.7e-80 267.5 0.2 1 1 6.8e-83 3.1e-80 267.4 0.2 20 317 18 317 2 317 0.94 MULTISPECIES: PDR/VanB family oxidoreductase [Acinetobacter] WP_000382530.1 - 314 CntB - 317 2.8e-75 251.1 0.6 1 1 6.9e-78 3.1e-75 250.9 0.6 8 317 2 314 1 314 0.96 PDR/VanB family oxidoreductase [Acinetobacter baumannii] WP_000077461.1 - 353 CntB - 317 2.4e-22 77.2 0.3 1 1 1e-24 4.5e-22 76.2 0.3 9 313 7 347 1 351 0.71 MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Acinetobacter calcoaceticus/baumannii complex] WP_000064953.1 - 338 CntB - 317 2.3e-21 73.9 0.0 1 2 9.1e-06 0.0041 14.0 0.3 243 307 18 86 13 92 0.84 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_000064953.1 - 338 CntB - 317 2.3e-21 73.9 0.0 2 2 6.6e-19 3e-16 57.1 0.0 5 222 107 336 103 338 0.78 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_001985613.1 - 344 CntB - 317 8.3e-20 68.8 0.1 1 2 1.1e-08 5.1e-06 23.5 0.2 243 310 19 88 2 93 0.75 MULTISPECIES: anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter] WP_001985613.1 - 344 CntB - 317 8.3e-20 68.8 0.1 2 2 1.6e-14 7.4e-12 42.7 0.0 8 222 110 338 103 343 0.74 MULTISPECIES: anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter] WP_001147890.1 - 356 CntB - 317 4.3e-16 56.6 0.3 1 1 1.1e-18 5.2e-16 56.3 0.3 40 317 71 356 39 356 0.74 MULTISPECIES: ferredoxin reductase [Acinetobacter] WP_000994544.1 - 341 CntB - 317 1e-14 52.0 1.5 1 1 2.9e-17 1.3e-14 51.7 1.5 84 306 108 331 30 336 0.69 MULTISPECIES: ferredoxin reductase [Acinetobacter] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000177715.1_ASM17771v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000177715.1_ASM17771v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000177715.1_ASM17771v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:06 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001277084.1 - 371 CntA - 371 9.2e-262 864.8 1.7 1 1 1.9e-264 1e-261 864.6 1.7 1 371 1 371 1 371 1.00 MULTISPECIES: Rieske 2Fe-2S domain-containing protein [Acinetobacter] WP_001088745.1 - 396 CntA - 371 1.3e-37 127.3 0.0 1 1 3.2e-40 1.7e-37 126.8 0.0 17 341 24 368 11 372 0.81 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000204398.1 - 471 CntA - 371 4.3e-31 105.8 0.0 1 1 1.2e-33 6.4e-31 105.2 0.0 17 226 24 238 13 263 0.84 MULTISPECIES: anthranilate 1,2-dioxygenase large subunit [Acinetobacter] WP_001084464.1 - 425 CntA - 371 1.5e-29 100.7 0.0 1 1 3.9e-32 2.1e-29 100.2 0.0 24 221 26 226 15 243 0.89 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] WP_001137401.1 - 460 CntA - 371 2.1e-27 93.6 0.0 1 1 5.2e-30 2.8e-27 93.2 0.0 5 228 13 244 9 281 0.82 MULTISPECIES: benzoate 1,2-dioxygenase large subunit [Acinetobacter] WP_000470073.1 - 358 CntA - 371 5.5e-09 33.0 0.0 1 1 2.1e-11 1.1e-08 32.0 0.0 58 168 19 123 1 128 0.84 aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter baumannii] WP_000991783.1 - 355 CntA - 371 4e-07 26.9 0.1 1 1 1.6e-09 8.5e-07 25.8 0.1 37 159 16 135 2 264 0.79 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Acinetobacter] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000177735.1_ASM17773v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000177735.1_ASM17773v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000177735.1_ASM17773v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:06 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000146428.1 - 318 CntB - 317 6.3e-208 686.9 0.8 1 1 1.5e-210 7.2e-208 686.7 0.8 1 317 2 318 2 318 1.00 MULTISPECIES: PDR/VanB family oxidoreductase [Acinetobacter] WP_000210290.1 - 317 CntB - 317 2.8e-80 267.5 0.2 1 1 6.8e-83 3.2e-80 267.4 0.2 20 317 18 317 2 317 0.94 MULTISPECIES: PDR/VanB family oxidoreductase [Acinetobacter] WP_000382530.1 - 314 CntB - 317 2.9e-75 251.1 0.6 1 1 6.9e-78 3.2e-75 250.9 0.6 8 317 2 314 1 314 0.96 PDR/VanB family oxidoreductase [Acinetobacter baumannii] WP_000077461.1 - 353 CntB - 317 2.5e-22 77.2 0.3 1 1 1e-24 4.7e-22 76.2 0.3 9 313 7 347 1 351 0.71 MULTISPECIES: phenylacetate-CoA oxygenase/reductase subunit PaaK [Acinetobacter calcoaceticus/baumannii complex] WP_000064953.1 - 338 CntB - 317 2.4e-21 73.9 0.0 1 2 9.1e-06 0.0043 14.0 0.3 243 307 18 86 13 92 0.84 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_000064953.1 - 338 CntB - 317 2.4e-21 73.9 0.0 2 2 6.6e-19 3.1e-16 57.1 0.0 5 222 107 336 103 338 0.78 ring-hydroxylating dioxygenase ferredoxin reductase family protein [Acinetobacter baumannii] WP_001985613.1 - 344 CntB - 317 8.6e-20 68.8 0.1 1 2 1.1e-08 5.3e-06 23.5 0.2 243 310 19 88 2 93 0.75 MULTISPECIES: anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter] WP_001985613.1 - 344 CntB - 317 8.6e-20 68.8 0.1 2 2 1.6e-14 7.7e-12 42.7 0.0 8 222 110 338 103 343 0.74 MULTISPECIES: anthranilate 1,2-dioxygenase electron transfer component AntC [Acinetobacter] WP_001147890.1 - 356 CntB - 317 4.4e-16 56.6 0.3 1 1 1.1e-18 5.4e-16 56.3 0.3 40 317 71 356 39 356 0.74 MULTISPECIES: ferredoxin reductase [Acinetobacter] WP_000994535.1 - 341 CntB - 317 2.7e-13 47.5 0.8 1 1 7.1e-16 3.3e-13 47.2 0.8 82 306 106 331 30 336 0.68 ferredoxin reductase [Acinetobacter baumannii] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000177735.1_ASM17773v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000177735.1_ASM17773v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000177735.1_ASM17773v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:06 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.6e-246 813.8 0.4 1 1 1.7e-249 4e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.5e-20 69.3 0.0 1 1 4.4e-23 1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000178315.1_ASM17831v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178315.1_ASM17831v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000178315.1_ASM17831v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:09 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.5e-185 613.8 0.1 1 1 1.4e-188 1.6e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 4.7e-25 86.4 0.0 1 1 5e-28 5.9e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.1e-13 49.0 0.0 1 1 6.8e-16 8.1e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.6e-08 32.2 0.2 1 1 1.6e-11 1.9e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000178315.1_ASM17831v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178315.1_ASM17831v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000178315.1_ASM17831v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:09 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.6e-246 813.8 0.4 1 1 1.7e-249 4.1e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.6e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000178695.1_ASM17869v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178695.1_ASM17869v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000178695.1_ASM17869v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:09 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.5e-185 613.8 0.1 1 1 1.4e-188 1.7e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 4.8e-25 86.4 0.0 1 1 5e-28 6e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883087.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.3e-13 46.2 0.0 18 222 164 391 155 394 0.77 NO-inducible flavohemoprotein [Escherichia coli] WP_000135039.1 - 84 CntB - 317 1.6e-08 32.2 0.2 1 1 1.6e-11 2e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000178695.1_ASM17869v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178695.1_ASM17869v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000178695.1_ASM17869v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:09 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.6e-246 813.8 0.4 1 1 1.7e-249 4.1e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.6e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000178735.1_ASM17873v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178735.1_ASM17873v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000178735.1_ASM17873v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:09 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.5e-185 613.8 0.1 1 1 1.4e-188 1.7e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 4.7e-25 86.4 0.0 1 1 5e-28 6e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.2e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.6e-08 32.2 0.2 1 1 1.6e-11 2e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000178735.1_ASM17873v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178735.1_ASM17873v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000178735.1_ASM17873v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:09 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_000067822.1 - 374 CntA - 371 3.6e-246 813.8 0.4 1 1 1.7e-249 4.1e-246 813.7 0.4 1 371 1 373 1 373 0.99 MULTISPECIES: carnitine monooxygenase subunit YeaW [Enterobacteriaceae] WP_000211172.1 - 453 CntA - 371 6.6e-20 69.3 0.0 1 1 4.4e-23 1.1e-19 68.6 0.0 23 169 22 171 13 183 0.87 MULTISPECIES: aromatic ring-hydroxylating dioxygenase subunit alpha [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm # Target file: ../protein/GCF_000178755.1_ASM17875v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178755.1_ASM17875v1_protein_cntA.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntA.hmm ../protein/GCF_000178755.1_ASM17875v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:10 2022 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WP_001287049.1 - 321 CntB - 317 1.5e-185 613.8 0.1 1 1 1.4e-188 1.7e-185 613.6 0.1 1 317 1 321 1 321 1.00 carnitine monooxygenase subunit YeaX [Escherichia coli] WP_000178647.1 - 322 CntB - 317 4.7e-25 86.4 0.0 1 1 5e-28 6e-25 86.1 0.0 9 304 12 311 6 321 0.78 NADH oxidoreductase [Escherichia coli] WP_000883120.1 - 396 CntB - 317 1.2e-13 49.0 0.0 1 1 6.8e-16 8.2e-13 46.2 0.0 18 222 164 391 155 394 0.77 MULTISPECIES: NO-inducible flavohemoprotein [Enterobacteriaceae] WP_000135039.1 - 84 CntB - 317 1.6e-08 32.2 0.2 1 1 1.6e-11 2e-08 31.9 0.2 243 311 13 79 3 82 0.80 MULTISPECIES: ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE [Enterobacteriaceae] # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm # Target file: ../protein/GCF_000178755.1_ASM17875v1_protein.faa # Option settings: hmmsearch --domtblout GCF_000178755.1_ASM17875v1_protein_cntB.tab --acc --noali --notextw -E 0.00001 --domT 0.5 --cpu 4 /data2/jiashulei/gutsmash-gutsmash/Seq_seed/hmm/TMA_cnt/CntB.hmm ../protein/GCF_000178755.1_ASM17875v1_protein.faa # Current dir: /data2/jiashulei/software/KofamKOALA/kofam_scan-master/47075_HumGut_contigs/hmm_TMA_cnt_new # Date: Thu Sep 1 22:49:10 2022 # [ok]