HMMER-Extractor Online Platform

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Please select the uploaded label file:


Please select the uploaded tab file:


Please enter the score value:


KOs and the corresponding enzymes:

Example file:

#The Profile Hidden Markov Models can be downloaded from the kofam website:ftp://ftp.genome.jp:21/pub/db/kofam/profiles.tar.gz


Note:

1.Tab file： After searching with hmmsearch implemented by the HMMER 3.3.2, the generated results should be merged together, Then the data folder containing the merged results of HMMER. （The following example code can be executed for mass file consolidation: find . -name "*.tab" | xargs -i cat {} > test_hmm_TMA_cnt.tab.）


2.Lable file: The lable file in which contain the full name of the genes to be extracted. (Note that the name of the gene lable file and the name of the merged results of HMMER should be the same.)